Welcome to the baudisgroup Pages

The baudisgroup website represents projects and information by the Computational Oncogenomics Group of the University of Zurich (UZH) and the Swiss Institute of Bioinformatics (SIB). For visitors more interested in Particle Astrophysics, we strongly recommend the website of another, although related, Professor Baudis.

The Computational Oncogenomics Group focus lies in the exploration of structural genome variations in cancer. Our work centres around our [arrayMap] Progenetix resource of curated molecular-cytogenetic and sequencing data. Specific projects explore computational methods, genomics of selected tumour entities as well as genomic variant patterns across malignancies. As members of the Global Alliance for Genomics and Health, the group is developing standards in biocuration and data sharing for genomic variants and phenotypic data, for instance in driving development of the ELIXIR Beacon project through the Beacon+ implementation. Other projects are related to genome data epistemology, e.g. geographic and diagnostic sampling biases.

Some Projects

Ongoing software and service projects can be visited at our Github organizations ([progenetix] and [baudisgroup]) and when looking at individual contributions to e.g. GA4GH and ELIXIR.

Latest News

hCNV Community and Implementation Studies

Michael Baudis

ELIXIR All Hands 2021 Human Data Day

At the Human Data Day Michael presents a very brief overview of the ending and upcoming ELIXIR hCNV implementation studies.

2021-06-11: more ...

hCNV data and the Progenetix Beacon

Michael Baudis

ELIXIR All Hands 2021

This presentation gives a brief overview of the use of the Progenetix resource to test and implement a genomics reference resource using the emerging Beacon v2 protocol.

2021-06-08: more ...

ELIXIR Beacon Project

Concepts | Status | History | Outlook

Michael Baudis

Research Data Alliance - RDA Virtual Plenary 17

This seminar gives an overview of current state of the Progenetix Beacon project and the overall connection to the Global Alliance for Genomics and Health (GA4GH).

2021-04-20: more ...

Support or Contact

For requests & support, please use standard Github procedures such as pull requests or issues on our project repositories, or contact us.

Address

Winterthurerstrasse 190 Y-13F-01 CH-8057 Zurich Switzerland

How to find the Baudisgroup

2019-03-18
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