This dependency-free array randomiser will return a re-shuffled array or a slice of random $iL array elements.
mbaudis 2018-07-20: more ...
Since the first release in 2000, the human reference genome is continuously being worked on. While the most recent major release (GRCh38) dates back to 2013, minor releases (GRCh38.pX) are issued more frequently and can be downloaded from the official NCBI Genome Reference Consortium website.
Michael 2018-07-20: more ...
As frequent-but-not-every-day-one-needs-these-command MongoDB users, we, obviously, can use a cheat sheet. Here is the start of one.
Since not all documents may have all keys, the following method loops over all documents and collects the encountered keys.
var dbks = {};
db.___your-collection-name___.find().forEach(function(doc){Object.keys(doc).forEach(function(key){allKeys[key]=1})})
dbks;
2021-02-03: more ...
The group is an active contributor to several public ontologies, both through mapping efforts (ICDOntologies, icdot2uberon) and by requesting terms relevant for genomic and metadata e.g. for EFO.
@mbaudis 2021-01-14: more ...
To visualize genomic segments based data data (e.g. CNV calls), there are two kinds of plots we can produce in the UCSC genome browser.
Bo Gao 2019-08-30: more ...
This utility allows the plotting of Google maps with included proportional markers, based on a file accessible through an URL (e.g. a Dropbox share link).
mbaudis 2018-07-20: more ...
This page contains some regular expressions which have come in handy during our work. Code is in Perl style syntax.
Michael 2018-07-20: more ...