Presentations

The shows a probably incomplete following list of presentations (posters, talks, abstracts) from group members. Usually, PDF versions of the slides or posters are linked from the details pages.

2019

ELIXIR All Hands - Lisbon 2019

Introduction to Beacon

Michael Baudis

2019-06-17: more ...

Human Genome Variation Society - Gothenburg 2019

Implementation Driven Development of Standards for Genomic Data Exchange from Cancer Genome Data Collections

Michael Baudis

2019-06-14: more ...

R&D Data Intelligence Leaders Forum Basel

Connecting the silos - Genomic Data Standards, Resources and the Global Alliance for Genomics and Health

Michael Baudis

2019-01-25: more ...

2018

UZH BIO390 “Introduction to Bioinformatics”

Bioinformatics - Introduction

Michael Baudis

2018-09-17: more ...

Abstract: ECCB 2018

ELIXIR Beacon - A Driver Project for the Global Alliance for Genomics and Health

Michael Baudis for the ELIXIR Beacon Project

2018-09-08: more ...

IMLS Progress Report

Towards understanding population effect on cancer

Qingyao Huang

Qingyao 2018-06-29: more ...

ELIXIR All Hands, Berlin

The ELIXIR Beacon in 2018: A driver project of GA4GH

Michael Baudis

2018-06-06: more ...

Abstract: ELIXIR All Hands 2018

Genomic profiles of cancer cell lines - A systematic review

Rahel Paloots, Qingyao Huang, Paula Carrio Cordo and Michael Baudis

2018-06-04: more ...

Abstract: ELIXIR All Hands 2018

Update on arrayMap Cancer Genome Resource

Qingyao Huang and Michael Baudis

2018-06-04: more ...

Abstract: ELIXIR All Hands 2018

Biocuration for cancer genome databases: arrayMap and Progenetix

Paula Carrio Cordo and Michael Baudis

2018-06-04: more ...

Abstract: ELIXIR All Hands 2018

ELIXIR Beacon - A Driver Project for the Global Alliance for Genomics and Health

Michael Baudis for the ELIXIR Beacon Project

2018-06-04: more ...

Abstract: ELIXIR All Hands 2018

segment_liftover : a Python tool to convert segments between genome assemblies

Bo Gao, Qingyao Huang and Michael Baudis

2018-06-04: more ...

DPPH - Data Protection in Personalized Health 2018, Lausanne

Genome Beacons for Data Discovery - Technical advances in a challenging environment

Michael Baudis

2018-02-15: more ...

2017

Special seminar at University of Timisoara Dermatology

Cancer Genome (Data) Analysis in Personalised Medicine

Michael Baudis

2017-12-07: more ...

UZH Cancer Biology course “Research with clinical samples

Personalised Medicine - Genome Variation / Data Formats / Resources / Sharing / Privacy

Michael Baudis

2017-12-01: more ...

GA4GH 2017 Plenary / Workstream Day

Developing Beacons for Data Discovery

Michael Baudis

2017-10-15: more ...

UZH BIO390 “Introduction to Bioinformatics”

Bioinformatics - Introduction

Michael Baudis

2017-09-19: more ...

[BC]2 2017 - Basel Computational Biology Conference

Advancing the Global Alliance for Genomics and Health data schemas through data-driven implementations

Michael Baudis

2017-09-13: more ...

Seminar at SDU Odense

Somatic CNV databases as resources for cancer research && GA4GH schema development

Michael Baudis

2017-08-29: more ...

Seminar at SDU Odense

Somatic CNV databases as resources for cancer research && GA4GH schema development

Michael Baudis

2017-08-29: more ...

ELIXIR All Hands, Rome

GA4GH Metadata & Beyond

Michael Baudis

2017-03-22: more ...

Seminar - Stanford Center for Genomics & Personalized Medicine

Personalized medicine in cancer

Michael Baudis

2017-02-21: more ...

Brupbacher Meeting

Implementing Data Models for the Global Alliance for Genomics and Health

Bo Gao

2017-02-01: more ...

R&D Data Intelligence Leaders Forum Basel

Genome data access - Application to personalized health and cancer research

Michael Baudis

2017-01-26: more ...

2016

Antrittsvorlesung Universität Zürich - Inaugural Lecture at University of Zurich

Cancer Genome (Data) Analysis

Michael Baudis

2016-12-19: more ...

LSZGS Cancer Biology course 2016

Personalized medicine in cancer

Michael Baudis

2016-12-02: more ...

Biocuration 2016, Geneva

Harvesting Cancer Genome Data

Michael Baudis

2016-04-14: more ...

VIB Conference “Applied Bioinformatics in Life Sciences”

Gene-based analysis of focal copy number aberration patterns in cancer genomes

Saumya Gupta

2016-03-17: more ...

2001

First BCATS Meeting - Biocomputing @ Stanford 2001

progenetix.net: storage and visualization of genomic aberration data in human malignancies

Michael Baudis

2001-10-20: more ...

Archive …

  • 2017-11-05: Qingyao Huang. EMBL Cancer Genomics poster: integrative analysis of cancer genome profiling data to study the interplay of genetic background and molecular mechanisms in cancer [pdf]
  • 2017-09-11: Michael Baudis, SIB-Novartis Workshop: Group projects “Biocuration to Cancer Genomics: Resources, Standards, Data Science” pdf
  • 2017-03-21: Bo Gao, ELIXIR All Hands, Rome: Implementing Data Models for the Global Alliance for Genomics and Health (poster)
  • 2017-03-02: Michael Baudis, SPHN Basel-Zürich cluster workshop: Project proposal slides “Knowledge infrastructure for cancer related personalized health applications”
  • 2017-02-01: Paula Carrio Cordo, Brupbacher Meeting: arrayMap & Progenetix 2017: Oncogenomic Databases Towards Personalized Medicine pdf
    • Poster about the ongoing development of our arrayMap and Progenetix resources, with emphasis on the identification of geographic and cancer type related biases in global oncogenomic data production
  • 2002-10-25: Michael Baudis, “BCATS - BioComputing AT Stanford 2002”: Collection and Transformation of Chromosomal Imbalances in Human Neoplasias for Data Mining Procedures
    • From the second BCATS meeting, an update on the Progenetix data repository and analysis tools